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EMBnet.digest August 2016
A Quick Guide to IMGT/Junction Analysis

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Date Title Alternative name Author Body Body Body (body:language) Comment count Comment status Date Date Description Description Files Files (field_files:delta) Link(s) Link(s) (field_news_links:delta) Newsletter category Newsletter category (field_simplenews_term:language) Spotlight window Topic(s) Topic(s) (field_news_topic:delta) Author Body Post date Updated date Updated/commented date Updated date
21/Feb/2017 Metagenomics data analysis course at CSC, Espoo, Finland 3-6 April 2017

The EMBnet member CSC Finnish center is organising, in collaboration with the ELIXIR EXCELERATE project and PRACE, an international workshop which covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics.

The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody.

In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced.

Registration by 05.03.2017 23:00

Participants are selected based on their motivation description in the registration form, and they will be informed about the selection results by 7.3.2017.
 
Detailed information are available at: https://www.csc.fi/web/training/-/metagenomics
 
Additional information

 

The EMBnet member CSC Finnish center is organising, in collaboration with the ELIXIR EXCELERATE project and PRACE, an international workshop which covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics.

The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody.

In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced.

Registration by 05.03.2017 23:00

Participants are selected based on their motivation description in the registration form, and they will be informed about the selection results by 7.3.2017.
 
Detailed information are available at: https://www.csc.fi/web/training/-/metagenomics
 
Additional information

 

0 Closed 0 0 metagenomics, data analysis 0

The EMBnet member CSC Finnish center is organising, in collaboration with the ELIXIR EXCELERATE project and PRACE, an international workshop which covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics.

The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody.

In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced.

Registration by 05.03.2017 23:00

Participants are selected based on their motivation description in the registration form, and they will be informed about the selection results by 7.3.2017.
 
Detailed information are available at: https://www.csc.fi/web/training/-/metagenomics
 
Additional information

 

Tue, 2017-02-21 10:36 Tue, 2017-02-21 10:36 Tue, 2017-02-21 10:36 Tue, 2017-02-21 10:36
21/Feb/2017 Metagenomics data analysis course at CSC, Espoo, Finland 3-6 April 2017

The EMBnet member CSC Finnish center is organising, in collaboration with the ELIXIR EXCELERATE project and PRACE, an international workshop which covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics.

The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody.

In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced.

Registration by 05.03.2017 23:00

Participants are selected based on their motivation description in the registration form, and they will be informed about the selection results by 7.3.2017.
 
Detailed information are available at: https://www.csc.fi/web/training/-/metagenomics
 
Additional information

 

The EMBnet member CSC Finnish center is organising, in collaboration with the ELIXIR EXCELERATE project and PRACE, an international workshop which covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics.

The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody.

In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced.

Registration by 05.03.2017 23:00

Participants are selected based on their motivation description in the registration form, and they will be informed about the selection results by 7.3.2017.
 
Detailed information are available at: https://www.csc.fi/web/training/-/metagenomics
 
Additional information

 

0 Closed 0 0 metagenomics, data analysis 1

The EMBnet member CSC Finnish center is organising, in collaboration with the ELIXIR EXCELERATE project and PRACE, an international workshop which covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics.

The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody.

In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced.

Registration by 05.03.2017 23:00

Participants are selected based on their motivation description in the registration form, and they will be informed about the selection results by 7.3.2017.
 
Detailed information are available at: https://www.csc.fi/web/training/-/metagenomics
 
Additional information

 

Tue, 2017-02-21 10:36 Tue, 2017-02-21 10:36 Tue, 2017-02-21 10:36 Tue, 2017-02-21 10:36
21/Feb/2017 Metagenomics data analysis course at CSC, Espoo, Finland 3-6 April 2017

The EMBnet member CSC Finnish center is organising, in collaboration with the ELIXIR EXCELERATE project and PRACE, an international workshop which covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics.

The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody.

In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced.

Registration by 05.03.2017 23:00

Participants are selected based on their motivation description in the registration form, and they will be informed about the selection results by 7.3.2017.
 
Detailed information are available at: https://www.csc.fi/web/training/-/metagenomics
 
Additional information

 

The EMBnet member CSC Finnish center is organising, in collaboration with the ELIXIR EXCELERATE project and PRACE, an international workshop which covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics.

The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody.

In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced.

Registration by 05.03.2017 23:00

Participants are selected based on their motivation description in the registration form, and they will be informed about the selection results by 7.3.2017.
 
Detailed information are available at: https://www.csc.fi/web/training/-/metagenomics
 
Additional information

 

0 Closed 0 1 metagenomics, data analysis 0

The EMBnet member CSC Finnish center is organising, in collaboration with the ELIXIR EXCELERATE project and PRACE, an international workshop which covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics.

The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody.

In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced.

Registration by 05.03.2017 23:00

Participants are selected based on their motivation description in the registration form, and they will be informed about the selection results by 7.3.2017.
 
Detailed information are available at: https://www.csc.fi/web/training/-/metagenomics
 
Additional information

 

Tue, 2017-02-21 10:36 Tue, 2017-02-21 10:36 Tue, 2017-02-21 10:36 Tue, 2017-02-21 10:36
21/Feb/2017 Metagenomics data analysis course at CSC, Espoo, Finland 3-6 April 2017

The EMBnet member CSC Finnish center is organising, in collaboration with the ELIXIR EXCELERATE project and PRACE, an international workshop which covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics.

The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody.

In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced.

Registration by 05.03.2017 23:00

Participants are selected based on their motivation description in the registration form, and they will be informed about the selection results by 7.3.2017.
 
Detailed information are available at: https://www.csc.fi/web/training/-/metagenomics
 
Additional information

 

The EMBnet member CSC Finnish center is organising, in collaboration with the ELIXIR EXCELERATE project and PRACE, an international workshop which covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics.

The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody.

In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced.

Registration by 05.03.2017 23:00

Participants are selected based on their motivation description in the registration form, and they will be informed about the selection results by 7.3.2017.
 
Detailed information are available at: https://www.csc.fi/web/training/-/metagenomics
 
Additional information

 

0 Closed 0 1 metagenomics, data analysis 1

The EMBnet member CSC Finnish center is organising, in collaboration with the ELIXIR EXCELERATE project and PRACE, an international workshop which covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics.

The workshop consists of lectures and hands-on exercises. User-friendly analysis platforms META-pipe and Chipster are used in the exercises, so no programming skills are required, and the workshop is thus suitable for everybody.

In addition to covering the analysis of whole genome shotgun sequencing data, the workshop has also an optional day on community analysis of amplicon sequencing data. Finally, international databases and standards for storing the data are introduced.

Registration by 05.03.2017 23:00

Participants are selected based on their motivation description in the registration form, and they will be informed about the selection results by 7.3.2017.
 
Detailed information are available at: https://www.csc.fi/web/training/-/metagenomics
 
Additional information

 

Tue, 2017-02-21 10:36 Tue, 2017-02-21 10:36 Tue, 2017-02-21 10:36 Tue, 2017-02-21 10:36
14/Dec/2016 Post-doctoral researcher in Bioinformatics with focus on infection biology/Virology

A post-doc position is available at the Section of Virology, Department of Biomedical Sciences and Veterinary Public Health, Faculty of Veterinary Medicine and Animal Sciences, Swedish University of Agricultural Sciences, Uppsala, Sweden. The main focus of the research at the Section of Virology is to study various aspects on viral infection of domestic and wild animals, including the vectors that transmit viruses. Our main interest is to study the microbiome in relation to health and disease. To do this we use large-scale sequence analysis and bioinformatics, but also more classical methods of virus cultivation, molecular methods and in vitro studies in cell cultures. Currently the section consists of one professor, four senior researchers, one adjunct lecturer, four PhD students and various guest researchers.

Duties: To be responsible for analysis of data from large-scale sequencing runs, in close contact with the other researchers at the section. This includes analysis of for example transcriptomic and metagenomic datasets. The selected candidate will also be responsible for her/his own research project/s. This includes all aspects from planning, experimental design, performing experiments and analysis of data to publishing the findings. The topic of this research will be discussed and depend on the background/qualifications of the applicant. To write applications for further financing is also part of duties within this position.

Qualifications: A PhD in biosciences, preferably in bioinformatics in relation to infection biology. Must be highly experienced and skillful in analysis of large sequence data sets and prior experience in working with annotations, metagenomic, transcriptomic and/or small RNA datasets are valuable. Also knowledge in statistics is highly beneficial. The applicant should have a good ability to work in a team, ability to work independently and personal qualities are also of high importance.

Competence: As postdoctoral appointments are career-developing positions for junior researchers, we are primarily looking for candidates with a doctoral degree that is three years old at most.

Place of work: Uppsala

A post-doc position is available at the Section of Virology, Department of Biomedical Sciences and Veterinary Public Health, Faculty of Veterinary Medicine and Animal Sciences, Swedish University of Agricultural Sciences, Uppsala, Sweden. The main focus of the research at the Section of Virology is to study various aspects on viral infection of domestic and wild animals, including the vectors that transmit viruses. Our main interest is to study the microbiome in relation to health and disease. To do this we use large-scale sequence analysis and bioinformatics, but also more classical methods of virus cultivation, molecular methods and in vitro studies in cell cultures. Currently the section consists of one professor, four senior researchers, one adjunct lecturer, four PhD students and various guest researchers.

Duties: To be responsible for analysis of data from large-scale sequencing runs, in close contact with the other researchers at the section. This includes analysis of for example transcriptomic and metagenomic datasets. The selected candidate will also be responsible for her/his own research project/s. This includes all aspects from planning, experimental design, performing experiments and analysis of data to publishing the findings. The topic of this research will be discussed and depend on the background/qualifications of the applicant. To write applications for further financing is also part of duties within this position.

Qualifications: A PhD in biosciences, preferably in bioinformatics in relation to infection biology. Must be highly experienced and skillful in analysis of large sequence data sets and prior experience in working with annotations, metagenomic, transcriptomic and/or small RNA datasets are valuable. Also knowledge in statistics is highly beneficial. The applicant should have a good ability to work in a team, ability to work independently and personal qualities are also of high importance.

Competence: As postdoctoral appointments are career-developing positions for junior researchers, we are primarily looking for candidates with a doctoral degree that is three years old at most.

Place of work: Uppsala

0 Closed Annons postdoc Virologen.pdf 0 0 jobs 0

A post-doc position is available at the Section of Virology, Department of Biomedical Sciences and Veterinary Public Health, Faculty of Veterinary Medicine and Animal Sciences, Swedish University of Agricultural Sciences, Uppsala, Sweden. The main focus of the research at the Section of Virology is to study various aspects on viral infection of domestic and wild animals, including the vectors that transmit viruses. Our main interest is to study the microbiome in relation to health and disease. To do this we use large-scale sequence analysis and bioinformatics, but also more classical methods of virus cultivation, molecular methods and in vitro studies in cell cultures. Currently the section consists of one professor, four senior researchers, one adjunct lecturer, four PhD students and various guest researchers.

Duties: To be responsible for analysis of data from large-scale sequencing runs, in close contact with the other researchers at the section. This includes analysis of for example transcriptomic and metagenomic datasets. The selected candidate will also be responsible for her/his own research project/s. This includes all aspects from planning, experimental design, performing experiments and analysis of data to publishing the findings. The topic of this research will be discussed and depend on the background/qualifications of the applicant. To write applications for further financing is also part of duties within this position.

Qualifications: A PhD in biosciences, preferably in bioinformatics in relation to infection biology. Must be highly experienced and skillful in analysis of large sequence data sets and prior experience in working with annotations, metagenomic, transcriptomic and/or small RNA datasets are valuable. Also knowledge in statistics is highly beneficial. The applicant should have a good ability to work in a team, ability to work independently and personal qualities are also of high importance.

Competence: As postdoctoral appointments are career-developing positions for junior researchers, we are primarily looking for candidates with a doctoral degree that is three years old at most.

Place of work: Uppsala

Wed, 2016-12-14 12:52 Wed, 2016-12-14 12:53 Wed, 2016-12-14 12:53 Wed, 2016-12-14 12:53