This is a web based graphical user interface to use ANN-Spec developed at EMBnet/CNB.

ANN-Spec was developed for finding un-gapped patterns in un-aligned DNA sequences. The program is primarily intended for finding transcription factor binding sites in promoter regions though it can be applied to protein sequences for the detection of conserved motifs as well.

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The Bioclipse project is aimed at creating a Java-based, open source, visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP). Bioclipse, as any RCP application, is based on a plugin architecture that inherits basic functionality and visual interfaces from Eclipse, such as help system, software updates, preferences, cross-platform deployment etc.

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CGView is a Java package for generating high quality, zoomable maps of circular genomes. Its primary purpose is to serve as a component of sequence annotation pipelines, as a means of generating visual output suitable for the web. Feature information and rendering options are supplied to the program using an XML file, a tab delimited file, or an NCBI ptt file...

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Many MacOSX packages and software for Bioinformatics.

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 EMBOSS is "The European Molecular Biology Open Software Suite". EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit.

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embossRUNNER a MacOSX interface to EMBOSS was created with X-Builder a $50 shareware from Acrux software, click here to download

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Jalview is a multiple alignment editor written in Java. It is used widely in a variety of web pages (e.g. the EBI Clustalw server and the Pfam protein domain database) but is available as a general purpose alignment editor...

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A nice site with beautiful freeware applications for MacOSX (iRNAi, 4Peaks, LabAssistant, EnzymeX)

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The biological data explosion of the 'omics' era requires fast access to many data types in rapidly growing data banks. The MRS software provides the tools to rapidly and reliably download, store, index, and query flat-file databanks. Data stored and indexed by MRS takes considerably less space on disk than the raw data, despite that these raw data are included. The MRS index information is part of the stored data. Therefore, public and private data can be combined by simple concatenation and thus without computational overheads....

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OsiriX is an image processing software dedicated to DICOM images (".dcm" / ".DCM" extension) produced by medical equipment (MRI, CT, PET, PET-CT, ...) and confocal microscopy (LSM and BioRAD-PIC format)...

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